tag:blogger.com,1999:blog-598459600874661631.post7922375982408570948..comments2023-05-18T17:52:29.775-04:00Comments on MaSuRCA genome assembly package: New version 3.2.1_12132016Unknownnoreply@blogger.comBlogger2125tag:blogger.com,1999:blog-598459600874661631.post-51007905303228658472016-12-13T22:12:38.393-05:002016-12-13T22:12:38.393-05:00Thank you for your comment. Please see my latest ...Thank you for your comment. Please see my latest post.Aleksey Ziminhttps://www.blogger.com/profile/03925841859901272280noreply@blogger.comtag:blogger.com,1999:blog-598459600874661631.post-82732730872533060422016-12-13T17:10:51.866-05:002016-12-13T17:10:51.866-05:00Hi Dr. Zimin,
I got the following message with ~20...Hi Dr. Zimin,<br />I got the following message with ~20x pacbio reads and >100x illumina.<br /><br />ERROR: the runCA option ovlMemory is not recognized.<br />This runCA functionality changed in CABOG version 7.<br />Here are suggestions for new runCA option values:<br /> ovlHashBits=23<br /> ovlHashBlockLength= 30000000<br /> (replaces ovlMemory=2GB)<br /> ovlHashBits=24<br /> ovlHashBlockLength=110000000<br /> (replaces ovlMemory=4GB)<br /> ovlHashBits=25<br /> ovlHashBlockLength=180000000<br /> (replaces ovlMemory=8GB)<br />ERROR: the runCA option ovlMemory is not recognized.<br />This runCA functionality changed in CABOG version 7.<br />Here are suggestions for new runCA option values:<br /> ovlHashBits=23<br /> ovlHashBlockLength= 30000000<br /> (replaces ovlMemory=2GB)<br /> ovlHashBits=24<br /> ovlHashBlockLength=110000000<br /> (replaces ovlMemory=4GB)<br /> ovlHashBits=25<br /> ovlHashBlockLength=180000000<br /> (replaces ovlMemory=8GB)<br /><br />Therefore I modified my runCA.spec by replacing ovlMemory=4GB.<br />Then it's running okay now.<br /><br />Ching-Ho ChangAnonymoushttps://www.blogger.com/profile/03614780322046747229noreply@blogger.com