I have just uploaded to YouTube (https://youtu.be/BEsDkjYKHCE) my presentation on the latest MaSuRCA mega-reads results on assembly of Illumina and Oxford Nanopore MinION human genome data. In this presentation I describe a de novo human genome assembly of NA12878 data set with N50 contig size of over 1Mb from $10000 worth of sequencing data and outline MaSuRCA mega-reads strategy.
MaSuRCA (Maryland Super-Read Celera Assembler) genome assembly software. Please cite our paper if you use MaSuRCA. MaSuRCA requires Illimina data, and it now supports third-generation PacBio/Nanopore MinION reads for hybrid assembly. MaSuRCA is distributed under an open source GPLv3 license.
Wednesday, September 27, 2017
MaSuRCA hybrid assembly strategy and recent results on Illumina and Oxford Nanopore data video presentation
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