Tuesday, December 13, 2016
ovlMemory error in hybrid Pacbio/MinION assembly
Please note that if you have the option ovlMemory set in the CA_PARAMETERS section of the config file, the Illumina+Pacbio/MinION assembly will give an error in CABOG. This is normal behavior, this option is not compatible with CABOG version 8 used for the long-read assembly. I suggest to remove any additional options that you may have in CA_PARAMETERS section of the configuration file, then re-generate assemble.sh and run the assembly and the assembly will proceed without error.
Posted by Aleksey Zimin at 10:11 PM