Tuesday, December 13, 2016

ovlMemory error in hybrid Pacbio/MinION assembly

Please note that if you have the option ovlMemory set in the CA_PARAMETERS section of the config file, the Illumina+Pacbio/MinION assembly will give an error in CABOG.  This is normal behavior, this option is not compatible with CABOG version 8 used for the long-read assembly.  I suggest to remove any additional options that you may have in CA_PARAMETERS section of the configuration file, then re-generate assemble.sh and run the assembly and the assembly will proceed without error.

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