At this time MaSuRCA supports Illumina,Sanger, 454, Oxford Nanopore and PacBio data. Please refer to MaSuRCA quick start manual http://www.genome.umd.edu/docs/MaSuRCA_QuickStartGuide.pdf before using MaSuRCA.
Please supply either Pacbio or Nanopore reads (not both) as PACBIO=file.fa or NANOPORE=file.fa in the configuration file. All Pacbio or Nanopore reads must be in a single fasta file!
To obtain the latest SOURCE CODE of MaSuRCA and compilation instructions, see this page. BINARIES for various Linux distributions are NOT YET AVAILABLE and they are coming soon.
The package is freely available under GPL open source license at http://www.genome.umd.edu. If you use MaSuRCA, please cite the following publications: